Codes to convert FASTAQ to FASTA format in Perl programming language
#/usr/bin/perl -w
use strict;
my $file;
my $fileOutput;
my $write=0;
$file = $ARGV[0];
$fileOutput = $ARGV[1];
open (IN, $file) or die “file can not open -$!”;
open OUTPUT, “>$fileOutput”;
while (my $line = )
{
if($line =~ m/^\@/) {
print OUTPUT ""
.">". substr($line,1);
$write=1;
} elsif ($write){
print OUTPUT ""
.$line. "\n";
$write=0;
[...]
Original post : [Perl] FASTAQ To FASTA Converter
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